I think most of the Aimpoint mounts are built to cowitness with more or less basic BUIS on AR15's. I believe the BUIS are made to be the same height at the standard iron sights.
All the Aimpoint mounts I've used (Larue, ARMS, and GG&G) seem to have been at the correct height when mounted on a flat top Armalite.
I have GG&G BUIS's on one of my rifles, and use a GG&G cantilever Aimpoint mount with them. They cowitness perfectly. My Larue and my ARMS mounts seem to have had too.
This is my Armalite with the GG&G sights on it.