I'm NOT an attorney, but I am an 07 FFL and I run across this type of question occasionally. I've had customers in similar situations have no problem whatsoever passing the "Brady" check to purchase a firearm.
Logically, you shouldn't have a problem getting your CWP, but for real bureaucratic run-around, you should just call the Commissioner of Agriculture's office...
I don't think you'll have an issue, but depending on the exact circumstances, your mileage may vary.... Good luck!